Uses of Class
net.sf.snver.pileup.meta.SnverMeta

Packages that use SnverMeta

net.sf.snver.pileup.core
net.sf.snver.pileup.loader
net.sf.snver.pileup.meta

Uses of SnverMeta in net.sf.snver.pileup.core

Methods in net.sf.snver.pileup.core with parameters of type SnverMeta

void	CoreAnalysis.analyze(SnverMeta meta, java.util.Properties properties, java.io.PrintWriter out, java.io.PrintWriter log) Evaluate SnverMeta for output
double	CoreAnalysis.getpValue(SnverMeta meta, int n) Deprecated.
double	CoreAnalysis.getpValue(SnverMeta meta, java.util.Properties properties) Calculate P value
void	CoreAnalysis.print(SnverMeta meta, java.util.Properties properties, java.io.PrintWriter out) Print meta information into vcf file
boolean	CoreAnalysis.test(SnverMeta meta, java.util.Properties properties, java.io.PrintWriter errorLog) Check for SnverMeta is satisfied with conditions

Uses of SnverMeta in net.sf.snver.pileup.loader

Methods in net.sf.snver.pileup.loader that return SnverMeta

SnverMeta

Peeker.next() Return the next element

Uses of SnverMeta in net.sf.snver.pileup.meta

Methods in net.sf.snver.pileup.meta that return SnverMeta

SnverMeta

PileupPool.compute(java.lang.String name, char ref, int index) Generate SnverMeta Object from pool

Methods in net.sf.snver.pileup.meta with parameters of type SnverMeta

int	SnverMeta.compareTo(SnverMeta snverMeta)