A B C D E F G H I M N O P S T U V

A

AbstractConfigurationFactory - Class in net.sf.snver.pileup.config

Abstract class for configuration object creation

Created by IntelliJ IDEA.

AbstractConfigurationFactory() - Constructor for class net.sf.snver.pileup.config.AbstractConfigurationFactory

add(SAMSequenceVo) - Method in class net.sf.snver.pileup.meta.PileupPool

Add SAMSequenceVo into pool

add(String, int, int) - Method in class net.sf.snver.pileup.util.Filter

Add a region to filter pool

afterParsing(Properties) - Method in class net.sf.snver.pileup.config.AbstractConfigurationFactory

Do special logic after the normal parsing routine

afterParsing(Properties) - Method in class net.sf.snver.pileup.config.IndividualConfigurationFactory

afterParsing(Properties) - Method in class net.sf.snver.pileup.config.PoolConfigurationFactory

analyze(SnverMeta, Properties, PrintWriter, PrintWriter) - Method in class net.sf.snver.pileup.core.CoreAnalysis

Evaluate SnverMeta for output