SAMSequenceVoFactory

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net.sf.snver.pileup.meta
Class SAMSequenceVoFactory

java.lang.Object
  net.sf.snver.pileup.meta.SAMSequenceVoFactory

Created by IntelliJ IDEA. User: weicheng hu Date: 10/20/11 Time: 2:37 PM

Method Summary
`boolean`	`checkRecord(net.sf.samtools.SAMRecord record)`
`SAMSequenceVo`	`createSequenceByCigar(net.sf.samtools.SAMRecord record)`
`static SAMSequenceVoFactory`	`getInstance()`
`void`	`setMappingQualityThreshold(int mq)`

Methods inherited from class java.lang.Object
`clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait`

Method Detail

public static SAMSequenceVoFactory getInstance()

public void setMappingQualityThreshold(int mq)

public SAMSequenceVo createSequenceByCigar(net.sf.samtools.SAMRecord record)

public boolean checkRecord(net.sf.samtools.SAMRecord record)