A B C D E F G H I M N O P S T U V

T

test(SnverMeta, Properties, PrintWriter) - Method in class net.sf.snver.pileup.core.CoreAnalysis

Check for SnverMeta is satisfied with conditions

testErrorNumericProperty() - Method in class net.sf.snver.pileup.test.IndividualConfigurationFactoryTest

testErrorNumericProperty() - Method in class net.sf.snver.pileup.test.PoolConfigurationFactoryTest

testFormatDouble() - Method in class net.sf.snver.pileup.util.NumFormatTest

testFormatDouble1() - Method in class net.sf.snver.pileup.util.NumFormatTest

testLackOfFRequiredProperty() - Method in class net.sf.snver.pileup.test.IndividualConfigurationFactoryTest

testLackOfFRequiredProperty() - Method in class net.sf.snver.pileup.test.PoolConfigurationFactoryTest

testNormalRoutine() - Method in class net.sf.snver.pileup.test.IndividualConfigurationFactoryTest

testNormalRoutine() - Method in class net.sf.snver.pileup.test.PoolConfigurationFactoryTest

testNullProperty() - Method in class net.sf.snver.pileup.test.IndividualConfigurationFactoryTest

testNullProperty() - Method in class net.sf.snver.pileup.test.PoolConfigurationFactoryTest

testPileup() - Method in class net.sf.snver.pileup.test.SnverPileupReaderTest

testPrintHelp() - Method in class net.sf.snver.pileup.test.PoolConfigurationFactoryTest

testUnexpectedProperty() - Method in class net.sf.snver.pileup.test.IndividualConfigurationFactoryTest

testUnexpectedProperty() - Method in class net.sf.snver.pileup.test.PoolConfigurationFactoryTest

THRESHOLD_BQ - Static variable in class net.sf.snver.pileup.config.Dictionary

THRESHOLD_FISHER - Static variable in class net.sf.snver.pileup.config.Dictionary

THRESHOLD_MQ - Static variable in class net.sf.snver.pileup.config.Dictionary

THRESHOLD_P - Static variable in class net.sf.snver.pileup.config.Dictionary

THRESHOLD_STRAND - Static variable in class net.sf.snver.pileup.config.Dictionary

toString() - Method in class net.sf.snver.pileup.loader.Peeker

toString() - Method in class net.sf.snver.pileup.meta.SnverMeta

TYPE_BOOLEAN - Static variable in class net.sf.snver.pileup.config.Dictionary

TYPE_DOUBLE - Static variable in class net.sf.snver.pileup.config.Dictionary

TYPE_FILE - Static variable in class net.sf.snver.pileup.config.Dictionary

TYPE_INTEGER - Static variable in class net.sf.snver.pileup.config.Dictionary

TYPE_LONG - Static variable in class net.sf.snver.pileup.config.Dictionary

TYPE_NULLABLE - Static variable in class net.sf.snver.pileup.config.Dictionary

TYPE_STRING - Static variable in class net.sf.snver.pileup.config.Dictionary

TYPE_UNKNOWN - Static variable in class net.sf.snver.pileup.config.Dictionary