Constant Field Values


Contents
net.sf.*

net.sf.snver.pileup.SNVerIndividual
public static final java.lang.String POST_FIX ".raw.vcf"

net.sf.snver.pileup.config.AbstractConfigurationFactory
protected static final java.lang.String NULL "NULL"

net.sf.snver.pileup.config.Dictionary
public static final java.lang.String CUT_OFF "CUT_OFF"
protected static final java.lang.String FWER "bonferroni="
public static final java.lang.String HELP "-h"
public static final java.lang.String HELP_ALIAS "-help"
public static final java.lang.String INPUT_BAM "-i"
public static final java.lang.String INPUT_INI "-c"
public static final java.lang.String INPUT_REF "-r"
public static final java.lang.String INPUT_REGION "-l"
public static final java.lang.String OPTION_A "-a"
public static final java.lang.String OPTION_HAPLOIDS "-n"
public static final java.lang.String OPTION_HETEROZYGOSITY "-het"
public static final java.lang.String OPTION_RATIO "-b"
public static final java.lang.String OPTION_TEST "-u"
public static final java.lang.String OPTION_THETA "-t"
public static final java.lang.String OUTPUT_PREFIX "-o"
public static final java.lang.String THRESHOLD_BQ "-bq"
public static final java.lang.String THRESHOLD_FISHER "-f"
public static final java.lang.String THRESHOLD_MQ "-mq"
public static final java.lang.String THRESHOLD_P "-p"
public static final java.lang.String THRESHOLD_STRAND "-s"
public static final int TYPE_BOOLEAN 4
public static final int TYPE_DOUBLE 3
protected static final int TYPE_FILE 0
public static final int TYPE_INTEGER 1
public static final int TYPE_LONG 2
public static final int TYPE_NULLABLE -2
public static final int TYPE_STRING -1
protected static final int TYPE_UNKNOWN -3

net.sf.snver.pileup.util.NumFormat
protected static final java.lang.String INFINITY "Inf"
protected static final java.lang.String NAN "NaN"