net.sf.snver.pileup.config
Class Dictionary

java.lang.Object
  net.sf.snver.pileup.config.Dictionary

public class Dictionary
extends java.lang.Object

Defined names static object

Created by IntelliJ IDEA. User: weicheng hu Date: 11/21/11 Time: 10:45 AM

Field Summary

static java.lang.String	CUT_OFF
protected static java.lang.String	FWER
static java.lang.String	HELP
static java.lang.String	HELP_ALIAS
static java.lang.String	INPUT_BAM
static java.lang.String	INPUT_INI
static java.lang.String	INPUT_REF
static java.lang.String	INPUT_REGION
static java.lang.String	OPTION_A
static java.lang.String	OPTION_HAPLOIDS
static java.lang.String	OPTION_HETEROZYGOSITY
static java.lang.String	OPTION_RATIO
static java.lang.String	OPTION_TEST
static java.lang.String	OPTION_THETA
static java.lang.String	OUTPUT_PREFIX
static java.lang.String	THRESHOLD_BQ
static java.lang.String	THRESHOLD_FISHER
static java.lang.String	THRESHOLD_MQ
static java.lang.String	THRESHOLD_P
static java.lang.String	THRESHOLD_STRAND
static int	TYPE_BOOLEAN
static int	TYPE_DOUBLE
protected static int	TYPE_FILE
static int	TYPE_INTEGER
static int	TYPE_LONG
static int	TYPE_NULLABLE
static int	TYPE_STRING
protected static int	TYPE_UNKNOWN

Constructor Summary

Dictionary()

Method Summary

static int	getPropertyType(java.lang.String key) Get the property type
static java.util.Set<java.lang.String>	stringPropertyNames() Get the set of property names

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

INPUT_BAM

public static final java.lang.String INPUT_BAM

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Constant Field Values

OUTPUT_PREFIX

public static final java.lang.String OUTPUT_PREFIX

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Constant Field Values

INPUT_REF

public static final java.lang.String INPUT_REF

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Constant Field Values

INPUT_INI

public static final java.lang.String INPUT_INI

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Constant Field Values

INPUT_REGION

public static final java.lang.String INPUT_REGION

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Constant Field Values

OPTION_HAPLOIDS

public static final java.lang.String OPTION_HAPLOIDS

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Constant Field Values

OPTION_HETEROZYGOSITY

public static final java.lang.String OPTION_HETEROZYGOSITY

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Constant Field Values

OPTION_A

public static final java.lang.String OPTION_A

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Constant Field Values

OPTION_RATIO

public static final java.lang.String OPTION_RATIO

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Constant Field Values

OPTION_TEST

public static final java.lang.String OPTION_TEST

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Constant Field Values

OPTION_THETA

public static final java.lang.String OPTION_THETA

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Constant Field Values

THRESHOLD_MQ

public static final java.lang.String THRESHOLD_MQ

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Constant Field Values

THRESHOLD_BQ

public static final java.lang.String THRESHOLD_BQ

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Constant Field Values

THRESHOLD_STRAND

public static final java.lang.String THRESHOLD_STRAND

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Constant Field Values

THRESHOLD_FISHER

public static final java.lang.String THRESHOLD_FISHER

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Constant Field Values

THRESHOLD_P

public static final java.lang.String THRESHOLD_P

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Constant Field Values

HELP

public static final java.lang.String HELP

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Constant Field Values

HELP_ALIAS

public static final java.lang.String HELP_ALIAS

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Constant Field Values

FWER

protected static final java.lang.String FWER

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Constant Field Values

CUT_OFF

public static final java.lang.String CUT_OFF

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Constant Field Values

TYPE_UNKNOWN

protected static final int TYPE_UNKNOWN

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Constant Field Values

TYPE_NULLABLE

public static final int TYPE_NULLABLE

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Constant Field Values

TYPE_STRING

public static final int TYPE_STRING

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Constant Field Values

TYPE_FILE

protected static final int TYPE_FILE

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Constant Field Values

TYPE_INTEGER

public static final int TYPE_INTEGER

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Constant Field Values

TYPE_LONG

public static final int TYPE_LONG

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Constant Field Values

TYPE_DOUBLE

public static final int TYPE_DOUBLE

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Constant Field Values

TYPE_BOOLEAN

public static final int TYPE_BOOLEAN

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Constant Field Values

Constructor Detail

Dictionary

public Dictionary()

Method Detail

getPropertyType

public static int getPropertyType(java.lang.String key)

Get the property type

Parameters:

key - String

Returns:

int

stringPropertyNames

public static java.util.Set<java.lang.String> stringPropertyNames()

Get the set of property names

Returns:

Set:String