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IndividualConfigurationFactory
- Class in
net.sf.snver.pileup.config
Created by IntelliJ IDEA.
IndividualConfigurationFactory()
- Constructor for class net.sf.snver.pileup.config.
IndividualConfigurationFactory
IndividualConfigurationFactoryTest
- Class in
net.sf.snver.pileup.test
Created by IntelliJ IDEA.
IndividualConfigurationFactoryTest()
- Constructor for class net.sf.snver.pileup.test.
IndividualConfigurationFactoryTest
INFINITY
- Static variable in class net.sf.snver.pileup.util.
NumFormat
INPUT_BAM
- Static variable in class net.sf.snver.pileup.config.
Dictionary
INPUT_INI
- Static variable in class net.sf.snver.pileup.config.
Dictionary
INPUT_REF
- Static variable in class net.sf.snver.pileup.config.
Dictionary
INPUT_REGION
- Static variable in class net.sf.snver.pileup.config.
Dictionary
isComplete(Properties)
- Method in class net.sf.snver.pileup.config.
AbstractConfigurationFactory
Check completion for the properties object parsing routine
isComplete(Properties)
- Method in class net.sf.snver.pileup.config.
PoolConfigurationFactory
isEmpty()
- Method in class net.sf.snver.pileup.meta.
PileupPool
Check is pool empty
isEmpty()
- Method in class net.sf.snver.pileup.meta.
SAMSequenceVo
Check base and score are empty
isEmpty()
- Method in class net.sf.snver.pileup.meta.
SnverMeta
Check is empty
isNoAlternate()
- Method in class net.sf.snver.pileup.meta.
SnverMeta
Deprecated.
isOnlyRef()
- Method in class net.sf.snver.pileup.meta.
SnverMeta
Check there is only ref
isOpen()
- Method in class net.sf.snver.pileup.loader.
FastaReader
Check the reference is loaded or not
isReference(char)
- Method in class net.sf.snver.pileup.meta.
SnverMeta
Check the base is a ref
isValueValid(String, int)
- Method in class net.sf.snver.pileup.config.
AbstractConfigurationFactory
Check for properties validation
isValueValid(String, int)
- Static method in class net.sf.snver.pileup.util.
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