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failed
- Variable in class net.sf.snver.pileup.core.
CoreAnalysis
FastaReader
- Class in
net.sf.snver.pileup.loader
Fasta file reader which is using for reference load
Created by IntelliJ IDEA.
FastaReader(String)
- Constructor for class net.sf.snver.pileup.loader.
FastaReader
Constructor
Filter
- Class in
net.sf.snver.pileup.util
Regional target object to filter result
Created by IntelliJ IDEA.
Filter()
- Constructor for class net.sf.snver.pileup.util.
Filter
filterOut(String, int)
- Method in class net.sf.snver.pileup.util.
Filter
Filter a position
filterOut(String, int, int)
- Method in class net.sf.snver.pileup.util.
Filter
Filter a chunk of position
filterOut(SAMRecord)
- Method in class net.sf.snver.pileup.util.
Filter
Filter a SAMRecord
FilterReader
- Class in
net.sf.snver.pileup.loader
Target file reader using for regional pileup
Created by IntelliJ IDEA.
FilterReader(String)
- Constructor for class net.sf.snver.pileup.loader.
FilterReader
Constructor
filterWithPValue(Properties, int)
- Static method in class net.sf.snver.pileup.util.
VcfFilter
Fisher(int, int, int, int)
- Static method in class net.sf.snver.pileup.util.math.
StrandBias
FisherExact
- Class in
net.sf.snver.pileup.util.math
This does a Fisher Exact test.
FisherExact(int)
- Constructor for class net.sf.snver.pileup.util.math.
FisherExact
constructor for FisherExact table
FisherExact(int, boolean)
- Constructor for class net.sf.snver.pileup.util.math.
FisherExact
formatDouble(double)
- Static method in class net.sf.snver.pileup.util.
NumFormat
formatDouble1(double)
- Static method in class net.sf.snver.pileup.util.
NumFormat
FWER
- Static variable in class net.sf.snver.pileup.config.
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