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F

failed - Variable in class net.sf.snver.pileup.core.CoreAnalysis
 
FastaReader - Class in net.sf.snver.pileup.loader
Fasta file reader which is using for reference load

Created by IntelliJ IDEA.

FastaReader(String) - Constructor for class net.sf.snver.pileup.loader.FastaReader
Constructor
Filter - Class in net.sf.snver.pileup.util
Regional target object to filter result

Created by IntelliJ IDEA.

Filter() - Constructor for class net.sf.snver.pileup.util.Filter
 
filterOut(String, int) - Method in class net.sf.snver.pileup.util.Filter
Filter a position
filterOut(String, int, int) - Method in class net.sf.snver.pileup.util.Filter
Filter a chunk of position
filterOut(SAMRecord) - Method in class net.sf.snver.pileup.util.Filter
Filter a SAMRecord
FilterReader - Class in net.sf.snver.pileup.loader
Target file reader using for regional pileup

Created by IntelliJ IDEA.

FilterReader(String) - Constructor for class net.sf.snver.pileup.loader.FilterReader
Constructor
filterWithPValue(Properties, int) - Static method in class net.sf.snver.pileup.util.VcfFilter
 
Fisher(int, int, int, int) - Static method in class net.sf.snver.pileup.util.math.StrandBias
 
FisherExact - Class in net.sf.snver.pileup.util.math
This does a Fisher Exact test.
FisherExact(int) - Constructor for class net.sf.snver.pileup.util.math.FisherExact
constructor for FisherExact table
FisherExact(int, boolean) - Constructor for class net.sf.snver.pileup.util.math.FisherExact
 
formatDouble(double) - Static method in class net.sf.snver.pileup.util.NumFormat
 
formatDouble1(double) - Static method in class net.sf.snver.pileup.util.NumFormat
 
FWER - Static variable in class net.sf.snver.pileup.config.Dictionary
 

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